HL_1VC6_001

3D structure

PDB id

1VC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

1VC6|1|B|U|123, 1VC6|1|B|C|126, 1VC6|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VC6_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.2954

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_83808.4

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1VC6|1|B|C|119
1VC6|1|B|U|120
1VC6|1|B|C|121
1VC6|1|B|C|122
1VC6|1|B|U|123
1VC6|1|B|C|124
1VC6|1|B|G|125
1VC6|1|B|C|126
1VC6|1|B|U|127
1VC6|1|B|G|128

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains