HL_1VC6_002

3D structure

PDB id

1VC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VC6_002 not in the Motif Atlas

Geometric match to HL_4PRF_002

Geometric discrepancy: 0.0779

The information below is about HL_4PRF_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36992.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1VC6|1|B|C|147
1VC6|1|B|A|148
1VC6|1|B|U|149
1VC6|1|B|U|150
1VC6|1|B|G|151
1VC6|1|B|C|152
1VC6|1|B|A|153
1VC6|1|B|C|154
1VC6|1|B|U|155
1VC6|1|B|C|156
1VC6|1|B|C|157
1VC6|1|B|G|158

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A