HL_1VFG_001

3D structure

PDB id

1VFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

1VFG|1|C|U|59, 1VFG|1|C|U|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23290.2

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

3

Unit IDs

1VFG|1|C|G|53
1VFG|1|C|U|54
1VFG|1|C|U|55
1VFG|1|C|C|56
1VFG|1|C|G|57
1VFG|1|C|A|58
1VFG|1|C|U|59
1VFG|1|C|U|60
1VFG|1|C|C|61

Current chains

Chain C

RNA (75-MER)

Nearby chains

Chain A

poly A polymerase