Motif HL_23290.2 Version HL_23290.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D2V_002 | 3D2V | 0.7938 | 1 | T-loop related | A | G | 54 | G | 55 | U | 56 | A | 57 | A | 58 | U | 59 | C | 61 | cWW | |
| 2 | HL_4R0D_010 | 4R0D | 0.0000 | 0 | A | U | 447 | G | 448 | U | 449 | A | 450 | A | 451 | C | 452 | G | 453 | ncWW | ntSHa | |
| 3 | HL_1VFG_001 | 1VFG | 0.8661 | 2 | C | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAUGC | 1 |
| UGUAACG | 1 |
| GUUCGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAUG | 1 |
| GUAAC | 1 |
| UUCGAUU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23290.2 | Only in the parent motif |
|---|---|---|---|
| HL_23290.1 Compare | HL_1VFG_001, HL_3D2V_002 | HL_4R0D_010 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- T-loop related (1)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.79 | Avg 0.58 | Max 0.94
Coloring options: