HL_1VQ5_001
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGCCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ5_001 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.0376
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
1VQ5|1|0|U|55
1VQ5|1|0|G|56
1VQ5|1|0|C|57
1VQ5|1|0|C|58
1VQ5|1|0|A|59
1VQ5|1|0|A|60
1VQ5|1|0|G|61
1VQ5|1|0|C|62
1VQ5|1|0|U|63
1VQ5|1|0|G|64
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
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