HL_1VQ5_074

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

1VQ5|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ5_074 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0515

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1VQ5|1|9|U|3033
1VQ5|1|9|A|3034
1VQ5|1|9|C|3035
1VQ5|1|9|C|3036
1VQ5|1|9|C|3037
1VQ5|1|9|A|3038
1VQ5|1|9|U|3039
1VQ5|1|9|C|3040
1VQ5|1|9|C|3041
1VQ5|1|9|C|3042
1VQ5|1|9|G|3043
1VQ5|1|9|A|3044
1VQ5|1|9|A|3045
1VQ5|1|9|C|3046
1VQ5|1|9|A|3047

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P