HL_1VQ7_068

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VQ7|1|0|G|2786, 1VQ7|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ7_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0413

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1VQ7|1|0|C|2780
1VQ7|1|0|U|2781
1VQ7|1|0|G|2782
1VQ7|1|0|A|2783
1VQ7|1|0|A|2784
1VQ7|1|0|C|2785
1VQ7|1|0|G|2786
1VQ7|1|0|C|2787
1VQ7|1|0|A|2788
1VQ7|1|0|U|2789
1VQ7|1|0|C|2790
1VQ7|1|0|U|2791
1VQ7|1|0|A|2792
1VQ7|1|0|A|2793
1VQ7|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P