HL_1VQ8_018
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUUG(1MA)AAAA
- Length
- 10 nucleotides
- Bulged bases
- 1VQ8|1|0|A|631
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ8_018 not in the Motif Atlas
- Homologous match to HL_4V9F_018
- Geometric discrepancy: 0.0496
- The information below is about HL_4V9F_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
1VQ8|1|0|U|623
1VQ8|1|0|U|624
1VQ8|1|0|U|625
1VQ8|1|0|U|626
1VQ8|1|0|G|627
1VQ8|1|0|1MA|628
1VQ8|1|0|A|629
1VQ8|1|0|A|630
1VQ8|1|0|A|631
1VQ8|1|0|A|632
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain L
- 50S ribosomal protein L15P
- Chain Y
- 50S ribosomal protein L32E
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