HL_1VQ9_024
3D structure
- PDB id
- 1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UCCUACAAUA
- Length
- 10 nucleotides
- Bulged bases
- 1VQ9|1|0|U|840, 1VQ9|1|0|A|844, 1VQ9|1|0|U|845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ9_024 not in the Motif Atlas
- Homologous match to HL_4V9F_024
- Geometric discrepancy: 0.039
- The information below is about HL_4V9F_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
1VQ9|1|0|U|837
1VQ9|1|0|C|838
1VQ9|1|0|C|839
1VQ9|1|0|U|840
1VQ9|1|0|A|841
1VQ9|1|0|C|842
1VQ9|1|0|A|843
1VQ9|1|0|A|844
1VQ9|1|0|U|845
1VQ9|1|0|A|846
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
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