HL_1VQ9_062

3D structure

PDB id

1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ9_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1426

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1VQ9|1|0|A|2506
1VQ9|1|0|G|2507
1VQ9|1|0|C|2508
1VQ9|1|0|A|2509
1VQ9|1|0|C|2510
1VQ9|1|0|A|2511
1VQ9|1|0|U|2512
1VQ9|1|0|A|2513
1VQ9|1|0|U|2514

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E