HL_1VQK_010
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 1VQK|1|0|C|318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQK_010 not in the Motif Atlas
- Homologous match to HL_4V9F_010
- Geometric discrepancy: 0.0421
- The information below is about HL_4V9F_010
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_13999.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
1VQK|1|0|U|312
1VQK|1|0|U|313
1VQK|1|0|G|314
1VQK|1|0|G|315
1VQK|1|0|A|316
1VQK|1|0|A|317
1VQK|1|0|C|318
1VQK|1|0|A|319
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain T
- 50S ribosomal protein L24P
- Chain Y
- 50S ribosomal protein L32E
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