HL_1VQK_056

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1VQK|1|0|A|2302, 1VQK|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQK_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0552

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1VQK|1|0|C|2298
1VQK|1|0|G|2299
1VQK|1|0|A|2300
1VQK|1|0|A|2301
1VQK|1|0|A|2302
1VQK|1|0|A|2303
1VQK|1|0|G|2304
1VQK|1|0|A|2305
1VQK|1|0|U|2306
1VQK|1|0|A|2307
1VQK|1|0|U|2308
1VQK|1|0|C|2309
1VQK|1|0|G|2310

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E

Chain Q

50S ribosomal protein L21e