HL_1VQK_068

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VQK|1|0|G|2786, 1VQK|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQK_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0316

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1VQK|1|0|C|2780
1VQK|1|0|U|2781
1VQK|1|0|G|2782
1VQK|1|0|A|2783
1VQK|1|0|A|2784
1VQK|1|0|C|2785
1VQK|1|0|G|2786
1VQK|1|0|C|2787
1VQK|1|0|A|2788
1VQK|1|0|U|2789
1VQK|1|0|C|2790
1VQK|1|0|U|2791
1VQK|1|0|A|2792
1VQK|1|0|A|2793
1VQK|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P