HL_1VQK_075

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

1VQK|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQK_075 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0502

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1VQK|1|9|U|3033
1VQK|1|9|A|3034
1VQK|1|9|C|3035
1VQK|1|9|C|3036
1VQK|1|9|C|3037
1VQK|1|9|A|3038
1VQK|1|9|U|3039
1VQK|1|9|C|3040
1VQK|1|9|C|3041
1VQK|1|9|C|3042
1VQK|1|9|G|3043
1VQK|1|9|A|3044
1VQK|1|9|A|3045
1VQK|1|9|C|3046
1VQK|1|9|A|3047

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P