HL_1VQN_013
3D structure
- PDB id
- 1VQN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUGGAUAUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQN_013 not in the Motif Atlas
- Homologous match to HL_4V9F_013
- Geometric discrepancy: 0.0375
- The information below is about HL_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87463.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
1VQN|1|0|G|390
1VQN|1|0|U|391
1VQN|1|0|U|392
1VQN|1|0|G|393
1VQN|1|0|G|394
1VQN|1|0|A|395
1VQN|1|0|U|396
1VQN|1|0|A|397
1VQN|1|0|U|398
1VQN|1|0|C|399
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S Ribosomal Protein L15E
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