3D structure

PDB id
1VQN (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UCAGAAG
Length
7 nucleotides
Bulged bases
1VQN|1|0|A|497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VQN_016 not in the Motif Atlas
Homologous match to HL_4V9F_016
Geometric discrepancy: 0.0604
The information below is about HL_4V9F_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

1VQN|1|0|U|493
1VQN|1|0|C|494
1VQN|1|0|A|495
1VQN|1|0|G|496
1VQN|1|0|A|497
1VQN|1|0|A|498
1VQN|1|0|G|499

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 2
50S ribosomal protein L39e
Chain R
50S ribosomal protein L22P

Coloring options:


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