HL_1VQN_068

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VQN|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQN_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0392

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1VQN|1|0|C|2780
1VQN|1|0|U|2781
1VQN|1|0|G|2782
1VQN|1|0|A|2783
1VQN|1|0|A|2784
1VQN|1|0|C|2785
1VQN|1|0|G|2786
1VQN|1|0|C|2787
1VQN|1|0|A|2788
1VQN|1|0|U|2789
1VQN|1|0|C|2790
1VQN|1|0|U|2791
1VQN|1|0|A|2792
1VQN|1|0|A|2793
1VQN|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P