HL_1VQN_074

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAACAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQN_074 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.1165

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1VQN|1|0|G|1195
1VQN|1|0|C|1196
1VQN|1|0|G|1197
1VQN|1|0|U|1198
1VQN|1|0|A|1199
1VQN|1|0|A|1200
1VQN|1|0|C|1201
1VQN|1|0|A|1202
1VQN|1|0|G|1203
1VQN|1|0|C|1204

Current chains

Chain 0

23S ribosomal rna

Nearby chains