HL_1VQO_010

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

1VQO|1|0|C|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0473

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

1VQO|1|0|U|312
1VQO|1|0|U|313
1VQO|1|0|G|314
1VQO|1|0|G|315
1VQO|1|0|A|316
1VQO|1|0|A|317
1VQO|1|0|C|318
1VQO|1|0|A|319

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32E