HL_1VQO_030

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1VQO|1|0|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.1727

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1VQO|1|0|C|1168
1VQO|1|0|U|1169
1VQO|1|0|U|1170
1VQO|1|0|A|1171
1VQO|1|0|G|1172
1VQO|1|0|A|1173
1VQO|1|0|A|1174
1VQO|1|0|G|1175
1VQO|1|0|C|1176
1VQO|1|0|A|1177
1VQO|1|0|G|1178

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P