HL_1VQO_056

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1VQO|1|0|A|2302, 1VQO|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0549

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1VQO|1|0|C|2298
1VQO|1|0|G|2299
1VQO|1|0|A|2300
1VQO|1|0|A|2301
1VQO|1|0|A|2302
1VQO|1|0|A|2303
1VQO|1|0|G|2304
1VQO|1|0|A|2305
1VQO|1|0|U|2306
1VQO|1|0|A|2307
1VQO|1|0|U|2308
1VQO|1|0|C|2309
1VQO|1|0|G|2310

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E

Chain Q

50S ribosomal protein L21e