HL_1VQO_068

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VQO|1|0|G|2786, 1VQO|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0305

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1VQO|1|0|C|2780
1VQO|1|0|U|2781
1VQO|1|0|G|2782
1VQO|1|0|A|2783
1VQO|1|0|A|2784
1VQO|1|0|C|2785
1VQO|1|0|G|2786
1VQO|1|0|C|2787
1VQO|1|0|A|2788
1VQO|1|0|U|2789
1VQO|1|0|C|2790
1VQO|1|0|U|2791
1VQO|1|0|A|2792
1VQO|1|0|A|2793
1VQO|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P