HL_1VQP_030

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1VQP|1|0|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.1825

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1VQP|1|0|C|1168
1VQP|1|0|U|1169
1VQP|1|0|U|1170
1VQP|1|0|A|1171
1VQP|1|0|G|1172
1VQP|1|0|A|1173
1VQP|1|0|A|1174
1VQP|1|0|G|1175
1VQP|1|0|C|1176
1VQP|1|0|A|1177
1VQP|1|0|G|1178

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P