HL_1VQP_031

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_031 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.148

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1VQP|1|0|C|1196
1VQP|1|0|G|1197
1VQP|1|0|U|1198
1VQP|1|0|A|1199
1VQP|1|0|A|1200
1VQP|1|0|C|1201
1VQP|1|0|A|1202
1VQP|1|0|G|1203

Current chains

Chain 0

23S ribosomal rna

Nearby chains