HL_1VQP_056

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1VQP|1|0|A|2302, 1VQP|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0452

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1VQP|1|0|C|2298
1VQP|1|0|G|2299
1VQP|1|0|A|2300
1VQP|1|0|A|2301
1VQP|1|0|A|2302
1VQP|1|0|A|2303
1VQP|1|0|G|2304
1VQP|1|0|A|2305
1VQP|1|0|U|2306
1VQP|1|0|A|2307
1VQP|1|0|U|2308
1VQP|1|0|C|2309
1VQP|1|0|G|2310

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E

Chain Q

50S ribosomal protein L21e