3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
CGAAAAGAUAUCG
Length
13 nucleotides
Bulged bases
1VQP|1|0|A|2302, 1VQP|1|0|C|2309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VQP_056 not in the Motif Atlas
Homologous match to HL_4V9F_056
Geometric discrepancy: 0.0452
The information below is about HL_4V9F_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

1VQP|1|0|C|2298
1VQP|1|0|G|2299
1VQP|1|0|A|2300
1VQP|1|0|A|2301
1VQP|1|0|A|2302
1VQP|1|0|A|2303
1VQP|1|0|G|2304
1VQP|1|0|A|2305
1VQP|1|0|U|2306
1VQP|1|0|A|2307
1VQP|1|0|U|2308
1VQP|1|0|C|2309
1VQP|1|0|G|2310

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain H
50S RIBOSOMAL PROTEIN L10E
Chain Q
50S ribosomal protein L21e

Coloring options:


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