HL_1VQP_075
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- UACCCAUCCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 1VQP|1|9|C|3040
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQP_075 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.0521
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1VQP|1|9|U|3033
1VQP|1|9|A|3034
1VQP|1|9|C|3035
1VQP|1|9|C|3036
1VQP|1|9|C|3037
1VQP|1|9|A|3038
1VQP|1|9|U|3039
1VQP|1|9|C|3040
1VQP|1|9|C|3041
1VQP|1|9|C|3042
1VQP|1|9|G|3043
1VQP|1|9|A|3044
1VQP|1|9|A|3045
1VQP|1|9|C|3046
1VQP|1|9|A|3047
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5P
- Chain N
- 50S ribosomal protein L18P
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