3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
GGUCGUC
Length
7 nucleotides
Bulged bases
1VVJ|1|RA|G|1325, 1VVJ|1|RA|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VVJ_070 not in the Motif Atlas
Homologous match to HL_7RQB_034
Geometric discrepancy: 0.0968
The information below is about HL_7RQB_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46680.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
27

Unit IDs

1VVJ|1|RA|G|1324
1VVJ|1|RA|G|1325
1VVJ|1|RA|U|1326
1VVJ|1|RA|C|1327
1VVJ|1|RA|G|1328
1VVJ|1|RA|U|1329
1VVJ|1|RA|C|1330

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RR
50S ribosomal protein L17
Chain RW
50S ribosomal protein L22

Coloring options:


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