HL_1VVJ_070

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1VVJ|1|RA|G|1325, 1VVJ|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_070 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0968

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

1VVJ|1|RA|G|1324
1VVJ|1|RA|G|1325
1VVJ|1|RA|U|1326
1VVJ|1|RA|C|1327
1VVJ|1|RA|G|1328
1VVJ|1|RA|U|1329
1VVJ|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22