HL_1VVJ_071

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_071 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.0941

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

1VVJ|1|RA|C|1363
1VVJ|1|RA|G|1364
1VVJ|1|RA|A|1365
1VVJ|1|RA|A|1366
1VVJ|1|RA|A|1367
1VVJ|1|RA|G|1368

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R7

50S ribosomal protein L35