HL_87030.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	1-4	2-3
1	HL_4KJI_001	4KJI	0.5330	4		C	RsmZ-2	G	5	A	6	A	10	C	12	cWW
2	HL_3NDB_001	3NDB	0.5398	2		M	SRP RNA	U	162	G	163	G	166	G	167	cWW
3	HL_3KTW_001	3KTW	0.4420	2		C	SRP RNA	U	163	G	164	G	167	G	168	cWW
4	HL_4WF9_031	4WF9	0.3327	2		X	LSU rRNA	C	1260	G	1261	A	1264	G	1265	cWW
5	HL_7A0S_031	7A0S	0.4000	2		X	LSU rRNA	C	1235	G	1236	A	1239	G	1240	cWW
6	HL_5J7L_164	5J7L	0.2793	2	Other HL	DA	LSU rRNA	U	1222	G	1223	A	1226	G	1227	cWW
7	HL_3AM1_002	3AM1	0.3780	2	Other HL	B	ASL-truncated tRNA	C	32	U	33	G	36	G	37	cWW
8	HL_5HR7_005	5HR7	0.1767	5		D	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
9	HL_5HR6_002	5HR6	0.2308	5		C	tRNA	C	31	C	32	C	36	G	39	cWW	ntSW
10	HL_4WF9_034	4WF9	0.3792	2	GNRA related	X	LSU rRNA	C	1400	G	1401	A	1404	G	1405	cWW
11	HL_5J7L_167	5J7L	0.2941	2	GNRA	DA	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
12	HL_7RQB_035	7RQB	0.2672	2	GNRA	1A	LSU rRNA	C	1363	G	1364	A	1367	G	1368	cWW
13	HL_1L9A_001	1L9A	0.3633	2	Other HL	B	signal recognition particle RNA S domain	G	146	G	147	G	150	C	151	cWW
14	HL_1JID_001	1JID	0.3382	2	Other HL	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	150	C	151	cWW
15	HL_1MFQ_001	1MFQ	0.3619	2	Other HL	A	SRP RNA	G	146	G	147	G	150	C	151	cWW
16	HL_6CZR_087	6CZR	0.2349	2	Other HL	1a	SSU rRNA	C	710	G	711	G	714	G	715	cWW
17	HL_4OQU_004	4OQU	0.1997	2	Other HL	A	SAM-I/IV riboswitch	C	76	G	77	A	80	G	81	cWW
18	HL_4LFB_016	4LFB	0.2278	2	Other HL	A	SSU rRNA	C	726	G	727	G	730	G	731	cWW
19	HL_5J7L_016	5J7L	0.2220	2	GNRA related	AA	SSU rRNA	C	726	G	727	G	730	G	731	cWW
20	HL_6SVS_001	6SVS	0.2284	2	GNRA	A	RNA (79-mer)	C	26	G	27	A	30	G	31	cWW
21	HL_1G1X_003	1G1X	0.2454	2	Other HL	E	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
22	HL_1G1X_005	1G1X	0.2295	2	Other HL	J	16S RIBOSOMAL RNA	C	726	G	727	G	730	G	731	cWW
23	HL_8C3A_212	8C3A	0.1871	2		CM	SSU rRNA	C	922	G	923	A	926	G	927	cWW
24	HL_4V88_207	4V88	0.2189	2	Other HL	A6	SSU rRNA	C	937	G	938	A	941	G	942	cWW
25	HL_6M0X_001	6M0X	0.1820	2		B	RNA (71-MER)	C	32	G	33	A	36	G	37	cWW
26	HL_6CZR_090	6CZR	0.2612	2	GNRA	1a	SSU rRNA	C	840	U	841	C	844	G	845	cWW	ntSH
27	HL_6UFG_005	6UFG	0.2899	2	Other HL	A	RNA (166-MER)	C	144	G	145	A	148	G	149	cWW
28	HL_5U3G_001	5U3G	0.1643	2		B	Guanidine-I riboswitch	C	18	G	19	A	22	G	23	cWW
29	HL_4C7O_001	4C7O	0.1585	2	Other HL	E	SRP RNA	C	19	G	20	A	23	G	24	cWW
30	HL_5J7L_190	5J7L	0.0000	2	Other HL	DA	LSU rRNA	U	2356	G	2357	G	2360	G	2361	cWW
31	HL_6LAX_002	6LAX	0.2455	2		A	RNA (55-MER)	U	42	G	43	A	46	A	47	cWW	ntsS
32	HL_7D81_001	7D81	0.6446	2		A	nadA RNA	C	26	G	27	A	30	G	31	cWW
33	HL_6DLR_001	6DLR	0.8215	2		A	Guanidine-I riboswitch	C	27	U	28	G	31	G	32	cWW	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	9
CGAAGG	5
GGGAGC	3
CGGAAG	2
CUUCGG	2
CCUUUCACG	2
GAAGGAUC	1
UGUAGG	1
UGGAGG	1
CGUAAG	1
UGUGAG	1
CGACAG	1
CGAGAG	1
CUAACG	1
UGACGG	1
UGAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	10
GAAG	5
GGAG	4
GGAA	2
UUCG	2
CUUUCAC	2
AAGGAU	1
GUAG	1
GUAA	1
GUGA	1
GACA	1
GAGA	1
UAAC	1
GACG	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_87030.2 Version HL_87030.2 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_87030.2 Version HL_87030.2 of this group appears in releases 3.80 to 3.86

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Csv

Json