HL_1VVJ_078

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

1VVJ|1|RA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_078 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0937

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

1VVJ|1|RA|C|1630|||A
1VVJ|1|RA|A|1631
1VVJ|1|RA|A|1632
1VVJ|1|RA|G|1633
1VVJ|1|RA|A|1634
1VVJ|1|RA|G|1635

Current chains

Chain RA

23S rRNA

Nearby chains