Motif HL_01057.2 Version HL_01057.2 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5NDH_001 | 5NDH | 0.1148 | 4 | Pseudoknot geometry with 3' bulge | A | RNA (16-mer) | G | 6 | C | 11 | cWW |
| 2 | HL_5VJ9_003 | 5VJ9 | 0.0000 | 4 | Pseudoknot geometry with 3' bulge | C | RNA (16-mer) | G | 6 | C | 11 | cWW |
| 3 | HL_5NDI_002 | 5NDI | 0.1262 | 4 | Pseudoknot geometry with 3' bulge | B | RNA (20-mer) | G | 8 | C | 13 | cWW |
| 4 | HL_7RQB_041 | 7RQB | 0.3439 | 4 | Pseudoknot geometry with 3' bulge (H) | 1A | LSU rRNA | C | 1631 | G | 1635 | cWW |
| 5 | HL_5TBW_022 | 5TBW | 0.5421 | 4 | Externally structured | 1 | LSU rRNA | C | 958 | G | 963 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACGAC | 3 |
| CAAGAG | 1 |
| CCUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGA | 3 |
| AAGA | 1 |
| CUCA | 1 |
- Annotations
-
- Pseudoknot geometry with 3' bulge (3)
- Externally structured (1)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.11 | Avg 0.27 | Max 0.58
Coloring options: