HL_1VVJ_123
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VVJ_123 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1569
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
1VVJ|1|XA|C|689
1VVJ|1|XA|G|690
1VVJ|1|XA|G|691
1VVJ|1|XA|U|692
1VVJ|1|XA|G|693
1VVJ|1|XA|A|694
1VVJ|1|XA|A|695
1VVJ|1|XA|A|696
1VVJ|1|XA|U|697
1VVJ|1|XA|G|698
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
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