HL_1VVJ_165

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

1VVJ|1|YA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_165 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3135

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1VVJ|1|YA|C|641
1VVJ|1|YA|G|642
1VVJ|1|YA|A|643
1VVJ|1|YA|A|644
1VVJ|1|YA|C|645
1VVJ|1|YA|A|646
1VVJ|1|YA|G|647

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y6

50S ribosomal protein L34

Chain Y8

tRNA acceptor end mimic

Chain YP

50S ribosomal protein L15