HL_1VVJ_168

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

1VVJ|1|YA|A|781, 1VVJ|1|YA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_168 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1293

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

1VVJ|1|YA|U|779
1VVJ|1|YA|G|780
1VVJ|1|YA|A|781
1VVJ|1|YA|A|782
1VVJ|1|YA|A|783
1VVJ|1|YA|A|784
1VVJ|1|YA|G|785

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2