Motif HL_23875.2 Version HL_23875.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_023 | 7A0S | 0.5143 | 2 | UNCG variation | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | G | 798 | cWW | cSW |
| 2 | HL_2NUE_001 | 2NUE | 0.4447 | 1 | UNCG variation | C | 46-MER | C | 21 | G | 22 | A | 24 | A | 25 | G | 26 | cWW | ncSW |
| 3 | HL_9H3G_003 | 9H3G | 0.3171 | 2 | 3 | 5.8S rRNA | C | 112 | A | 113 | A | 114 | U | 116 | G | 118 | cWW | ||
| 4 | HL_9AXU_073 | 9AXU | 0.3608 | 2 | 4 | 5.8S rRNA | C | 116 | A | 117 | C | 118 | U | 120 | G | 122 | cWW | ||
| 5 | HL_9PN5_075 | 9PN5 | 0.3624 | 2 | A4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | ||
| 6 | HL_8OI5_073 | 8OI5 | 0.3647 | 2 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | ||
| 7 | HL_9SUM_070 | 9SUM | 0.3385 | 2 | C | 5.8S rRNA | C | 104 | A | 105 | C | 106 | U | 108 | G | 110 | cWW | ||
| 8 | HL_8GLP_080 | 8GLP | 0.3563 | 1 | L8 | 5.8S rRNA | C | 107 | A | 108 | C | 109 | U | 110 | G | 112 | cWW | ||
| 9 | HL_9H3G_006 | 9H3G | 0.1486 | 1 | A | LSU rRNA | U | 67 | A | 68 | A | 69 | C | 70 | A | 72 | cWW | cSW | |
| 10 | HL_9AXU_002 | 9AXU | 0.1498 | 1 | 2 | LSU rRNA | U | 69 | A | 70 | A | 71 | C | 72 | A | 74 | cWW | cSW | |
| 11 | HL_8GLP_002 | 8GLP | 0.0816 | 1 | L5 | LSU rRNA | U | 68 | A | 69 | A | 70 | C | 71 | A | 73 | cWW | cSW | |
| 12 | HL_8OI5_002 | 8OI5 | 0.0702 | 1 | 1 | LSU rRNA | C | 68 | A | 69 | A | 70 | C | 71 | G | 73 | cWW | cSW | |
| 13 | HL_9PN5_002 | 9PN5 | 0.0585 | 1 | A1 | LSU rRNA | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW | |
| 14 | HL_9SUM_003 | 9SUM | 0.0000 | 1 | A | LSU rRNA | C | 67 | A | 68 | A | 69 | C | 70 | G | 72 | cWW | cSW | |
| 15 | HL_4WF9_007 | 4WF9 | 0.2011 | 1 | X | LSU rRNA | A | 228 | A | 229 | A | 230 | A | 231 | U | 233 | cWW | cSW | |
| 16 | HL_7A0S_007 | 7A0S | 0.2710 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | cSW | |
| 17 | HL_9DFE_006 | 9DFE | 0.2834 | 1 | 1A | LSU rRNA | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW | ||
| 18 | HL_4UYK_003 | 4UYK | 0.4303 | 1 | R | SRP RNA | U | 98 | G | 99 | U | 100 | A | 101 | G | 103 | cWW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 4 |
| UAACCA | 2 |
| CAACAG | 2 |
| UGAAAAG | 1 |
| CGCAAG | 1 |
| CAAGUUG | 1 |
| CACUUG | 1 |
| UAACAA | 1 |
| CAACCG | 1 |
| AAAAUU | 1 |
| AGAAUU | 1 |
| AGAAAU | 1 |
| UGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 4 |
| AACA | 3 |
| AACC | 3 |
| GAAAA | 1 |
| GCAA | 1 |
| AAGUU | 1 |
| ACUU | 1 |
| AAAU | 1 |
| GAAU | 1 |
| GAAA | 1 |
| GUAA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (16)
- UNCG variation (2)
- Basepair signature
- cWW-cSW-F
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.82
Coloring options: