HL_1VVJ_170

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

1VVJ|1|YA|C|885, 1VVJ|1|YA|C|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_170 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3998

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

1VVJ|1|YA|C|884
1VVJ|1|YA|C|885
1VVJ|1|YA|C|886
1VVJ|1|YA|A|887
1VVJ|1|YA|C|888
1VVJ|1|YA|C|889
1VVJ|1|YA|A|890
1VVJ|1|YA|G|892

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13