HL_1VVJ_173

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1VVJ|1|YA|U|1066, 1VVJ|1|YA|A|1067, 1VVJ|1|YA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_173 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4115

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1VVJ|1|YA|C|1064
1VVJ|1|YA|U|1065
1VVJ|1|YA|U|1066
1VVJ|1|YA|A|1067
1VVJ|1|YA|G|1068
1VVJ|1|YA|A|1069
1VVJ|1|YA|A|1070
1VVJ|1|YA|G|1071
1VVJ|1|YA|C|1072
1VVJ|1|YA|A|1073
1VVJ|1|YA|G|1074

Current chains

Chain YA

23S rRNA

Nearby chains