HL_1VVJ_197

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

1VVJ|1|YA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_197 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.383

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1VVJ|1|YA|C|2209
1VVJ|1|YA|G|2210
1VVJ|1|YA|G|2211
1VVJ|1|YA|A|2212
1VVJ|1|YA|U|2213
1VVJ|1|YA|G|2215

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2

Chain YI

50S ribosomal protein L9