3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
CUAAAAGGUAACG
Length
13 nucleotides
Bulged bases
1VVJ|1|YA|A|2268, 1VVJ|1|YA|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VVJ_199 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.0787
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

1VVJ|1|YA|C|2264
1VVJ|1|YA|U|2265
1VVJ|1|YA|A|2266
1VVJ|1|YA|A|2267
1VVJ|1|YA|A|2268
1VVJ|1|YA|A|2269
1VVJ|1|YA|G|2270
1VVJ|1|YA|G|2271
1VVJ|1|YA|U|2272
1VVJ|1|YA|A|2273
1VVJ|1|YA|A|2274
1VVJ|1|YA|C|2275
1VVJ|1|YA|G|2276

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain YB
5S ribosomal RNA; 5S rRNA
Chain YQ
50S ribosomal protein L16

Coloring options:


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