HL_1VVJ_223

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

1VVJ|1|YA|A|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_223 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3185

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1VVJ|1|YA|G|2303
1VVJ|1|YA|G|2304
1VVJ|1|YA|A|2305
1VVJ|1|YA|C|2306
1VVJ|1|YA|G|2307
1VVJ|1|YA|G|2308
1VVJ|1|YA|A|2309
1VVJ|1|YA|A|2310
1VVJ|1|YA|A|2311
1VVJ|1|YA|U|2312
1VVJ|1|YA|C|2313

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YG

50S ribosomal protein L5