HL_1VW3_061

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUAUAU

Length

8 nucleotides

Bulged bases

1VW3|1|A|U|3023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VW3_061 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.1958

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1VW3|1|A|G|3022
1VW3|1|A|U|3023
1VW3|1|A|U|3024
1VW3|1|A|U|3025
1VW3|1|A|A|3026
1VW3|1|A|U|3027
1VW3|1|A|A|3028
1VW3|1|A|U|3029

Current chains

Chain A

21S ribosomal RNA

Nearby chains