HL_1VWW_007

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUGCUUGGGAAUGCAGC

Length

18 nucleotides

Bulged bases

1VWW|1|5|G|294, 1VWW|1|5|A|295, 1VWW|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68081.7

Basepair signature

cWW-R-R-tWH-R-R

Number of instances in this motif group

13

Unit IDs

1VWW|1|5|G|285
1VWW|1|5|U|286
1VWW|1|5|U|287
1VWW|1|5|G|288
1VWW|1|5|C|289
1VWW|1|5|U|290
1VWW|1|5|U|291
1VWW|1|5|G|292
1VWW|1|5|G|293
1VWW|1|5|G|294
1VWW|1|5|A|295
1VWW|1|5|A|296
1VWW|1|5|U|297
1VWW|1|5|G|298
1VWW|1|5|C|299
1VWW|1|5|A|300
1VWW|1|5|G|301
1VWW|1|5|C|302

Current chains

Chain 5

28S ribosomal RNA

Nearby chains