1VWW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_1VWW_001 | 1/5/30:52 | No text annotation | ||
HL_1VWW_002 | 1/5/68:73 | No text annotation | geometric HL_5TBW_002 NA | |
HL_1VWW_003 | 1/5/88:96 | No text annotation | ||
HL_1VWW_004 | 1/5/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
HL_1VWW_077 | 1/5/204:211 | T-loop with 2 stacked bulged bases | geometric HL_5DH6_002 HL_13999.2 | |
HL_1VWW_006 | 1/5/230:238 | No text annotation | geometric HL_8C3A_054 NA | |
HL_1VWW_007 | 1/5/285:302 | No text annotation | ||
HL_1VWW_008 | 1/5/313:324 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
HL_1VWW_009 | 1/5/368:373 | No text annotation | geometric HL_8H9D_001 NA | |
HL_1VWW_010 | 1/5/393:398 | GNRA | geometric HL_7QQP_001 HL_34789.2 | |
HL_1VWW_011 | 1/5/996:1047 | No text annotation | ||
HL_1VWW_012 | 1/5/1171:1190 | No text annotation | ||
HL_1VWW_013 | 1/5/1252:1258 | GNRA | geometric HL_4LFB_012 HL_34789.2 | |
HL_1VWW_014 | 1/5/1364:1373 | No text annotation | ||
HL_1VWW_015 | 1/5/1405:1412 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
HL_1VWW_016 | 1/5/1436:1448 | No text annotation | ||
HL_1VWW_017 | 1/5/1479:1486 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
HL_1VWW_018 | 1/5/1561:1566 | GNRA | geometric HL_8C3A_216 NA | |
HL_1VWW_019 | 1/5/1592:1603 | No text annotation | ||
HL_1VWW_020 | 1/5/1627:1635 | No text annotation | geometric HL_8C3A_021 NA | |
HL_1VWW_021 | 1/5/1675:1680 | Externally structured | geometric HL_8C3A_022 NA | |
HL_1VWW_022 | 1/5/1763:1769 | No text annotation | geometric HL_4O26_001 HL_53014.1 | |
HL_1VWW_023 | 1/5/1861:1873 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
HL_1VWW_078 | 1/5/1886:1893 | No text annotation | geometric HL_8P9A_138 HL_47171.1 | |
HL_1VWW_025 | 1/5/2006:2013 | No text annotation | geometric HL_7Z42_002 HL_19413.2 | |
HL_1VWW_026 | 1/5/2130:2244 | Mini UNCG | geometric HL_8C3A_198 NA | |
HL_1VWW_027 | 1/5/2317:2322 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
HL_1VWW_028 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | geometric HL_8C3A_031 NA | |
HL_1VWW_029 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
HL_1VWW_030 | 1/5/2458:2463 | Externally structured | geometric HL_8C3A_022 NA | |
HL_1VWW_031 | 1/5/2487:2491 | No text annotation | ||
HL_1VWW_032 | 1/5/2522:2533 | No text annotation | ||
HL_1VWW_033 | 1/5/2558:2569 | No text annotation | ||
HL_1VWW_034 | 1/5/2578:2583 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
HL_1VWW_035 | 1/5/2622:2634 | No text annotation | ||
HL_1VWW_036 | 1/5/2664:2670 | No text annotation | geometric HL_8C3A_038 NA | |
HL_1VWW_037 | 1/5/2705:2710 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
HL_1VWW_038 | 1/5/2810:2816 | GNRA | geometric HL_5TBW_042 NA | |
HL_1VWW_039 | 1/5/2872:2877 | UNCG | geometric HL_4PMI_004 HL_61337.2 | |
HL_1VWW_079 | 1/5/2910:3584 | No text annotation | ||
HL_1VWW_041 | 1/5/3614:3618 | No text annotation | geometric HL_5TBW_045 NA | |
HL_1VWW_042 | 1/5/3639:3649 | No text annotation | geometric HL_4WF9_043 HL_87681.1 | |
HL_1VWW_043 | 1/5/3666:3676 | No text annotation | geometric HL_4WT8_234 NA | |
HL_1VWW_044 | 1/5/3708:3742 | No text annotation | ||
HL_1VWW_045 | 1/5/3757:3767 | No text annotation | geometric HL_5TBW_049 NA | |
HL_1VWW_046 | 1/5/3781:3811 | No text annotation | ||
HL_1VWW_047 | 1/5/3873:3882 | No text annotation | geometric HL_5TBW_051 NA | |
HL_1VWW_048 | 1/5/3948:4065 | No text annotation | geometric HL_8C3A_054 NA | |
HL_1VWW_049 | 1/5/4102:4107 | UNCG | geometric HL_8F5G_001 HL_61337.2 | |
HL_1VWW_050 | 1/5/4139:4145 | No text annotation | geometric HL_6D12_001 HL_89167.2 | |
HL_1VWW_051 | 1/5/4193:4201 | No text annotation | geometric HL_5TBW_054 NA | |
HL_1VWW_052 | 1/5/4210:4222 | No text annotation | geometric HL_5J7L_187 NA | |
HL_1VWW_053 | 1/5/4250:4258 | No text annotation | geometric HL_8C3A_057 NA | |
HL_1VWW_054 | 1/5/4301:4309 | No text annotation | geometric HL_8C3A_039 NA | |
HL_1VWW_080 | 1/5/4321:4326 | GNRA | geometric HL_7A0S_047 HL_34789.2 | |
HL_1VWW_056 | 1/5/4347:4365 | No text annotation | ||
HL_1VWW_057 | 1/5/4412:4430 | No text annotation | ||
HL_1VWW_058 | 1/5/4472:4483 | No text annotation | ||
HL_1VWW_059 | 1/5/4495:4505 | No text annotation | ||
HL_1VWW_060 | 1/5/4540:4545 | No text annotation | geometric HL_4V9F_011 HL_75660.7 | |
HL_1VWW_061 | 1/5/4603:4608 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
HL_1VWW_062 | 1/5/4644:4653 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
HL_1VWW_081 | 1/5/4686:4704 | No text annotation | ||
HL_1VWW_064 | 1/5/4907:4914 | No text annotation | geometric HL_8C3A_006 NA | |
HL_1VWW_065 | 1/5/4972:4986 | No text annotation | ||
HL_1VWW_066 | 1/5/5018:5031 | No text annotation | geometric HL_5TBW_226 NA | |
HL_1VWW_067 | 1/7/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
HL_1VWW_068 | 1/7/86:91 | GNRA | geometric HL_5TBW_019 NA | |
HL_1VWW_069 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_8C3A_229 NA | |
HL_1VWW_073 | 1/8/47:56 | No text annotation | geometric HL_8CRE_074 NA | |
HL_1VWW_070 | 1/8/68:90 | No text annotation | ||
HL_1VWW_074 | 1/8/68:90 | No text annotation | ||
HL_1VWW_075 | 1/8/107:112 | No text annotation | geometric HL_8P9A_188 HL_13184.2 | |
HL_1VWW_072 | 1/8/121:129 | No text annotation | geometric HL_4V88_194 NA | |
HL_1VWW_076 | 1/8/121:129 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_1VWW_005 | No text annotation | ||
HL_1VWW_024 | No text annotation | ||
HL_1VWW_040 | No text annotation | ||
HL_1VWW_055 | No text annotation | ||
HL_1VWW_063 | No text annotation | ||
HL_1VWW_071 | tRNA D-loop |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_1VWW_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | geometric IL_6XKO_001 IL_05642.2 | |
IL_1VWW_168 | 1/5/11:14, 1/8/143:145 | Isolated non-canonical cWW pair | geometric IL_7QQP_008 IL_01003.2 | |
IL_1VWW_003 | 1/5/26:29, 1/5/53:57 | No text annotation | ||
IL_1VWW_004 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_006 NA | |
IL_1VWW_169 | 1/5/117:122, 1/5/147:154 | No text annotation | ||
IL_1VWW_006 | 1/5/122:128, 1/5/140:147 | No text annotation | ||
IL_1VWW_007 | 1/5/160:162, 1/5/273:276 | No text annotation | geometric IL_4V87_185 NA | |
IL_1VWW_008 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
IL_1VWW_009 | 1/5/180:182, 1/5/255:256 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
IL_1VWW_010 | 1/5/184:189, 1/5/252:253 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
IL_1VWW_011 | 1/5/199:201, 1/5/214:215 | Single bulged U | geometric IL_4V9F_029 IL_97561.2 | |
IL_1VWW_012 | 1/5/348:350, 1/8/25:26 | Single bulged A | geometric IL_5J7L_246 NA | |
IL_1VWW_013 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
IL_1VWW_170 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
IL_1VWW_015 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
IL_1VWW_016 | 1/5/462:474, 1/5/680:693 | No text annotation | ||
IL_1VWW_017 | 1/5/482:497, 1/5/656:672 | No text annotation | ||
IL_1VWW_018 | 1/5/497:499, 1/5/655:656 | No text annotation | ||
IL_1VWW_019 | 1/5/500:505, 1/5/653:654 | Single stack bend | geometric IL_4V9F_005 IL_15011.2 | |
IL_1VWW_020 | 1/5/508:510, 1/5/649:650 | No text annotation | ||
IL_1VWW_021 | 1/5/512:515, 1/5/646:647 | Multiple bulged bases | geometric IL_3MXH_004 IL_71421.2 | |
IL_1VWW_022 | 1/5/722:724, 1/5/942:946 | No text annotation | ||
IL_1VWW_023 | 1/5/726:731, 1/5/938:940 | No text annotation | ||
IL_1VWW_024 | 1/5/731:735, 1/5/928:938 | No text annotation | ||
IL_1VWW_025 | 1/5/735:737, 1/5/927:928 | Single stack bend | geometric IL_5TBW_070 NA | |
IL_1VWW_026 | 1/5/740:742, 1/5/922:924 | Isolated non-canonical cWW pair | geometric IL_8C3A_393 NA | |
IL_1VWW_171 | 1/5/745:756, 1/5/907:919 | No text annotation | ||
IL_1VWW_028 | 1/5/989:992, 1/5/1051:1064 | No text annotation | ||
IL_1VWW_029 | 1/5/1081:1082, 1/5/1217:1219 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
IL_1VWW_030 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation | ||
IL_1VWW_031 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_6XKO_001 IL_05642.2 | |
IL_1VWW_032 | 1/5/1094:1097, 1/5/1198:1202 | No text annotation | geometric IL_1HYS_004 NA | |
IL_1VWW_172 | 1/5/1357:1363, 1/5/1374:1382 | No text annotation | ||
IL_1VWW_034 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | ||
IL_1VWW_035 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_5J7L_333 NA | |
IL_1VWW_173 | 1/5/1470:1478, 1/5/1487:1494 | No text annotation | ||
IL_1VWW_174 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation | ||
IL_1VWW_038 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
IL_1VWW_175 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_5J7L_263 NA | |
IL_1VWW_040 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | geometric IL_8C3A_034 NA | |
IL_1VWW_176 | 1/5/1590:1592, 1/5/1603:1604 | No text annotation | geometric IL_8CRE_035 NA | |
IL_1VWW_042 | 1/5/1732:1737, 1/5/1792:1797 | No text annotation | ||
IL_1VWW_043 | 1/5/1737:1745, 1/5/1785:1792 | No text annotation | ||
IL_1VWW_044 | 1/5/1746:1759, 1/5/1773:1784 | No text annotation | ||
IL_1VWW_177 | 1/5/1761:1763, 1/5/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
IL_1VWW_046 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | geometric IL_8C3A_051 NA | |
IL_1VWW_047 | 1/5/1910:1922, 1/5/2062:2066 | No text annotation | ||
IL_1VWW_048 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
IL_1VWW_049 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
IL_1VWW_050 | 1/5/1945:1951, 1/5/2032:2037 | No text annotation | ||
IL_1VWW_051 | 1/5/1957:1967, 1/5/2020:2026 | No text annotation | ||
IL_1VWW_052 | 1/5/1969:2001, 1/5/2016:2018 | No text annotation | ||
IL_1VWW_053 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.2 | |
IL_1VWW_178 | 1/5/2081:2085, 1/5/2272:2275 | No text annotation | geometric IL_8BH9_001 IL_65740.1 | |
IL_1VWW_055 | 1/5/2087:2128, 1/5/2246:2270 | No text annotation | ||
IL_1VWW_179 | 1/5/2298:2301, 1/5/2334:2336 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_01003.2 | |
IL_1VWW_057 | 1/5/2302:2310, 1/5/2328:2333 | No text annotation | ||
IL_1VWW_058 | 1/5/2310:2315, 1/5/2324:2328 | No text annotation | ||
IL_1VWW_059 | 1/5/2402:2405, 1/5/2785:2802 | No text annotation | ||
IL_1VWW_060 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
IL_1VWW_061 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | geometric IL_8C3A_067 NA | |
IL_1VWW_062 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend | geometric IL_7MLX_001 IL_15011.2 | |
IL_1VWW_063 | 1/5/2542:2547, 1/5/2772:2774 | Decoding loop related | geometric IL_5Z1I_002 NA | |
IL_1VWW_064 | 1/5/2589:2596, 1/5/2749:2756 | No text annotation | ||
IL_1VWW_180 | 1/5/2597:2607, 1/5/2732:2748 | No text annotation | ||
IL_1VWW_066 | 1/5/2613:2615, 1/5/2722:2726 | No text annotation | ||
IL_1VWW_067 | 1/5/2642:2648, 1/5/2685:2692 | No text annotation | ||
IL_1VWW_068 | 1/5/2648:2664, 1/5/2670:2685 | No text annotation | ||
IL_1VWW_069 | 1/5/2702:2705, 1/5/2710:2714 | No text annotation | ||
IL_1VWW_181 | 1/5/2832:2844, 1/5/3844:3853 | No text annotation | ||
IL_1VWW_071 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn | geometric IL_7A0S_060 IL_10432.1 | |
IL_1VWW_072 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_1VWW_073 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | geometric IL_4V9F_111 IL_80252.1 | |
IL_1VWW_074 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
IL_1VWW_075 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
IL_1VWW_113 | 1/5/2867:2872, 1/5/2877:2883 | No text annotation | geometric IL_8P9A_307 IL_20700.1 | |
IL_1VWW_115 | 1/5/2893:2897, 1/5/3602:3608 | No text annotation | ||
IL_1VWW_077 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation | ||
IL_1VWW_116 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation | ||
IL_1VWW_118 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | geometric IL_4V9F_064 IL_14190.2 | |
IL_1VWW_079 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | geometric IL_5TBW_083 NA | |
IL_1VWW_119 | 1/5/3660:3665, 1/5/3677:3684 | No text annotation | geometric IL_8P9A_311 IL_14684.1 | |
IL_1VWW_120 | 1/5/3700:3704, 1/5/3748:3750 | No text annotation | ||
IL_1VWW_182 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation | geometric IL_8CRE_090 NA | |
IL_1VWW_082 | 1/5/3895:3902, 1/5/4558:4565 | No text annotation | ||
IL_1VWW_122 | 1/5/3895:3902, 1/5/4558:4565 | No text annotation | ||
IL_1VWW_083 | 1/5/3912:3915, 1/5/4388:4390 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.2 | |
IL_1VWW_124 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | geometric IL_5J7L_324 NA | |
IL_1VWW_183 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges | geometric IL_4WF9_082 IL_87316.1 | |
IL_1VWW_086 | 1/5/4095:4099, 1/5/4110:4113 | No text annotation | ||
IL_1VWW_129 | 1/5/4095:4099, 1/5/4110:4113 | No text annotation | ||
IL_1VWW_087 | 1/5/4238:4245, 1/5/4263:4286 | No text annotation | ||
IL_1VWW_088 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
IL_1VWW_134 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_8P9A_388 IL_14190.2 | |
IL_1VWW_089 | 1/5/4294:4299, 1/5/4311:4316 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
IL_1VWW_090 | 1/5/4453:4459, 1/5/4517:4528 | No text annotation | ||
IL_1VWW_091 | 1/5/4536:4540, 1/5/4545:4550 | Triple non-canonical cWW pairs | geometric IL_8DP3_002 IL_71154.2 | |
IL_1VWW_092 | 1/5/4577:4582, 1/5/4721:4726 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
IL_1VWW_141 | 1/5/4577:4582, 1/5/4721:4726 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
IL_1VWW_093 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5TBW_114 NA | |
IL_1VWW_142 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_8P9A_342 IL_58355.2 | |
IL_1VWW_094 | 1/5/4590:4594, 1/5/4616:4620 | Partly complementary | geometric IL_8D29_010 IL_71154.2 | |
IL_1VWW_095 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
IL_1VWW_144 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 NA | |
IL_1VWW_096 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
IL_1VWW_145 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
IL_1VWW_097 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_82016.1 | |
IL_1VWW_098 | 1/5/4637:4642, 1/5/4655:4662 | No text annotation | ||
IL_1VWW_099 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | geometric IL_8VTW_054 NA | |
IL_1VWW_149 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | geometric IL_7A0S_033 IL_08938.1 | |
IL_1VWW_184 | 1/5/4740:4747, 1/5/4953:4959 | No text annotation | ||
IL_1VWW_101 | 1/5/4755:4765, 1/5/4869:4878 | No text annotation | ||
IL_1VWW_102 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.2 | |
IL_1VWW_153 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.2 | |
IL_1VWW_103 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
IL_1VWW_154 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
IL_1VWW_104 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
IL_1VWW_155 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
IL_1VWW_105 | 1/5/4996:5017, 1/5/5032:5055 | No text annotation | ||
IL_1VWW_106 | 1/7/15:19, 1/7/59:64 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_71154.2 | |
IL_1VWW_185 | 1/7/21:27, 1/7/52:57 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
IL_1VWW_108 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 NA | |
IL_1VWW_161 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 NA | |
IL_1VWW_109 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_1MJI_004 IL_58103.12 | |
IL_1VWW_162 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
IL_1VWW_110 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.2 | |
IL_1VWW_164 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.2 | |
IL_1VWW_111 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_01003.2 | |
IL_1VWW_165 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_01003.2 | |
IL_1VWW_112 | 1/7/82:86, 1/7/91:94 | Tandem non-canonical cWW pairs | geometric IL_8C3A_438 NA | |
IL_1VWW_166 | 1/7/82:86, 1/7/91:94 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_1VWW_002 | No text annotation | ||
IL_1VWW_005 | No text annotation | ||
IL_1VWW_014 | No text annotation | ||
IL_1VWW_027 | No text annotation | ||
IL_1VWW_033 | No text annotation | ||
IL_1VWW_036 | No text annotation | ||
IL_1VWW_037 | No text annotation | ||
IL_1VWW_039 | Triple sheared with non-canonical cWW | ||
IL_1VWW_041 | Isolated non-canonical cWW pair | ||
IL_1VWW_045 | Tandem non-canonical cWW pairs | ||
IL_1VWW_054 | Partly complementary | ||
IL_1VWW_056 | Tandem non-canonical cWW pairs | ||
IL_1VWW_065 | No text annotation | ||
IL_1VWW_070 | No text annotation | ||
IL_1VWW_076 | No text annotation | ||
IL_1VWW_078 | Isolated non-canonical cWW pair | ||
IL_1VWW_080 | No text annotation | ||
IL_1VWW_081 | Isolated non-canonical cWW pair | ||
IL_1VWW_084 | No text annotation | ||
IL_1VWW_085 | Double sheared with non-canonical cWW | ||
IL_1VWW_100 | No text annotation | ||
IL_1VWW_107 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_1VWW_018 | 1/5/194:199, 1/5/215:228, 1/5/240:247 | No text annotation | ||
J3_1VWW_019 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | geometric J3_8CRE_004 NA | |
J3_1VWW_003 | 1/5/380:387, 1/5/414:421, 1/8/13:20 | No text annotation | ||
J3_1VWW_004 | 1/5/447:459, 1/5/697:704, 1/5/1293:1299 | No text annotation | ||
J3_1VWW_005 | 1/5/706:713, 1/5/955:978, 1/5/1276:1291 | No text annotation | ||
J3_1VWW_020 | 1/5/1529:1537, 1/5/1622:1626, 1/5/1636:1645 | No text annotation | ||
J3_1VWW_021 | 1/5/1540:1548, 1/5/1580:1584, 1/5/1609:1619 | No text annotation | ||
J3_1VWW_022 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
J3_1VWW_023 | 1/5/2450:2457, 1/5/2464:2476, 1/5/2501:2509 | No text annotation | ||
J3_1VWW_024 | 1/5/2549:2556, 1/5/2571:2575, 1/5/2757:2770 | No text annotation | ||
J3_1VWW_011 | 1/5/2575:2578, 1/5/2583:2589, 1/5/2756:2757 | No text annotation | ||
J3_1VWW_025 | 1/5/3934:3939, 1/5/4074:4088, 1/5/4161:4176 | No text annotation | ||
J3_1VWW_013 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | geometric J3_8C3A_009 NA | |
J3_1VWW_014 | 1/5/4463:4470, 1/5/4485:4493, 1/5/4507:4513 | No text annotation | ||
J3_1VWW_015 | 1/5/4748:4754, 1/5/4879:4888, 1/5/4931:4952 | No text annotation | ||
J3_1VWW_026 | 1/5/4969:4972, 1/5/4986:4994, 1/5/5057:5064 | No text annotation | ||
J3_1VWW_027 | 1/7/4:14, 1/7/65:66, 1/7/109:115 | No text annotation | ||
J4_1VWW_005 | 1/5/980:984, 1/5/1069:1079, 1/5/1221:1248, 1/5/1262:1274 | No text annotation | ||
J4_1VWW_006 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2541, 1/5/2775:2784 | No text annotation | ||
J4_1VWW_007 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
J4_1VWW_008 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
J5_1VWW_001 | 1/5/111:116, 1/5/155:160, 1/5/276:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
J5_1VWW_002 | 1/5/1333:1340, 1/5/1516:1519, 1/5/1658:1662, 1/5/2287:2295, 1/5/2339:2353 | No text annotation | ||
J5_1VWW_003 | 1/5/1352:1355, 1/5/1384:1399, 1/5/1418:1421, 1/5/1464:1468, 1/5/1496:1504 | No text annotation | ||
J5_1VWW_004 | 1/5/2855:2863, 1/5/2887:2891, 1/5/3610:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | ||
J5_1VWW_006 | 1/5/3903:3911, 1/5/4391:4407, 1/5/4435:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
J6_1VWW_002 | 1/5/3634:3638, 1/5/3650:3658, 1/5/3686:3698, 1/5/3752:3756, 1/5/3768:3781, 1/5/3811:3826 | No text annotation | ||
J7_1VWW_002 | 1/5/1665:1674, 1/5/1681:1688, 1/5/1848:1860, 1/5/1874:1885, 1/5/1894:1901, 1/5/2075:2081, 1/5/2275:2284 | No text annotation | ||
J8_1VWW_001 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4238, 1/5/4286:4291, 1/5/4318:4319, 1/5/4328:4346, 1/5/4366:4381 | No text annotation | ||
J8_1VWW_002 | 1/5/3920:3923, 1/5/4188:4192, 1/5/4202:4205, 1/5/4227:4245, 1/5/4263:4291, 1/5/4318:4319, 1/5/4328:4346, 1/5/4366:4381 | No text annotation | ||
J10_1VWW_002 | 1/5/16:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:342, 1/8/32:45, 1/8/58:66, 1/8/92:106, 1/8/113:120, 1/8/130:141 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_1VWW_001 | No text annotation | ||
J3_1VWW_002 | No text annotation | ||
J3_1VWW_006 | No text annotation | ||
J3_1VWW_007 | No text annotation | ||
J3_1VWW_008 | No text annotation | ||
J3_1VWW_009 | No text annotation | ||
J3_1VWW_010 | No text annotation | ||
J3_1VWW_012 | No text annotation | ||
J3_1VWW_016 | No text annotation | ||
J3_1VWW_017 | No text annotation | ||
J4_1VWW_001 | No text annotation | ||
J4_1VWW_002 | No text annotation | ||
J4_1VWW_003 | No text annotation | ||
J4_1VWW_004 | No text annotation | ||
J5_1VWW_005 | No text annotation | ||
J6_1VWW_001 | No text annotation | ||
J7_1VWW_001 | No text annotation | ||
J10_1VWW_001 | No text annotation |
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