RNA 3D Hub //

1VWW Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1VWW_0011/5/30:52No text annotation
HL_1VWW_0021/5/68:73No text annotation
geometric
HL_5TBW_002
NA
HL_1VWW_0031/5/88:96No text annotation
HL_1VWW_0041/5/131:137No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_1VWW_0061/5/230:238No text annotation
geometric
HL_8C3A_054
NA
HL_1VWW_0071/5/285:302No text annotation
HL_1VWW_0081/5/313:324No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_1VWW_0091/5/368:373No text annotation
geometric
HL_8H9D_001
NA
HL_1VWW_0101/5/393:398GNRA
geometric
HL_7QQP_001
HL_37824.7
HL_1VWW_0111/5/996:1047No text annotation
HL_1VWW_0121/5/1171:1190No text annotation
HL_1VWW_0131/5/1252:1258GNRA
geometric
HL_4LFB_012
HL_37824.7
HL_1VWW_0141/5/1364:1373No text annotation
HL_1VWW_0151/5/1405:1412No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_1VWW_0161/5/1436:1448No text annotation
HL_1VWW_0171/5/1479:1486No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_1VWW_0181/5/1561:1566GNRA
geometric
HL_8C3A_216
NA
HL_1VWW_0191/5/1592:1603No text annotation
HL_1VWW_0201/5/1627:1635No text annotation
geometric
HL_8C3A_021
NA
HL_1VWW_0211/5/1675:1680Externally structured
geometric
HL_8C3A_022
NA
HL_1VWW_0221/5/1763:1769No text annotation
geometric
HL_4O26_001
HL_35941.1
HL_1VWW_0231/5/1861:1873No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_1VWW_0251/5/2006:2013No text annotation
geometric
HL_7Z42_002
HL_49922.4
HL_1VWW_0261/5/2130:2244Mini UNCG
geometric
HL_8C3A_198
NA
HL_1VWW_0271/5/2317:2322No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_1VWW_0281/5/2376:2384T-loop with 2 stacked bulged bases
geometric
HL_8C3A_031
NA
HL_1VWW_0291/5/2420:2426Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_1VWW_0301/5/2458:2463Externally structured
geometric
HL_8C3A_022
NA
HL_1VWW_0311/5/2487:2491No text annotation
HL_1VWW_0321/5/2522:2533No text annotation
HL_1VWW_0331/5/2558:2569No text annotation
HL_1VWW_0341/5/2578:2583No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_1VWW_0351/5/2622:2634No text annotation
HL_1VWW_0361/5/2664:2670No text annotation
geometric
HL_8C3A_038
NA
HL_1VWW_0371/5/2705:2710No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_1VWW_0381/5/2810:2816GNRA
geometric
HL_5TBW_042
NA
HL_1VWW_0391/5/2872:2877UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_1VWW_0411/5/3614:3618No text annotation
geometric
HL_5TBW_045
NA
HL_1VWW_0421/5/3639:3649No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_1VWW_0431/5/3666:3676No text annotation
geometric
HL_4WT8_234
NA
HL_1VWW_0441/5/3708:3742No text annotation
HL_1VWW_0451/5/3757:3767No text annotation
geometric
HL_5TBW_049
NA
HL_1VWW_0461/5/3781:3811No text annotation
HL_1VWW_0471/5/3873:3882No text annotation
geometric
HL_5TBW_051
NA
HL_1VWW_0481/5/3948:4065No text annotation
geometric
HL_8C3A_054
NA
HL_1VWW_0491/5/4102:4107UNCG
geometric
HL_8F5G_001
HL_34617.5
HL_1VWW_0501/5/4139:4145No text annotation
geometric
HL_6D12_001
HL_48417.5
HL_1VWW_0511/5/4193:4201No text annotation
geometric
HL_5TBW_054
NA
HL_1VWW_0521/5/4210:4222No text annotation
geometric
HL_5J7L_187
HL_91939.2
HL_1VWW_0531/5/4250:4258No text annotation
geometric
HL_8C3A_057
NA
HL_1VWW_0541/5/4301:4309No text annotation
geometric
HL_8C3A_039
NA
HL_1VWW_0561/5/4347:4365No text annotation
HL_1VWW_0571/5/4412:4430No text annotation
HL_1VWW_0581/5/4472:4483No text annotation
HL_1VWW_0591/5/4495:4505No text annotation
HL_1VWW_0601/5/4540:4545No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_1VWW_0611/5/4603:4608No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_1VWW_0621/5/4644:4653No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_1VWW_0641/5/4907:4914No text annotation
geometric
HL_8C3A_006
NA
HL_1VWW_0651/5/4972:4986No text annotation
HL_1VWW_0661/5/5018:5031No text annotation
geometric
HL_5TBW_226
NA
HL_1VWW_0671/7/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_1VWW_0681/7/86:91GNRA
geometric
HL_5TBW_019
NA
HL_1VWW_0691/8/47:56Pseudoknot with intercalation
geometric
HL_8C3A_229
NA
HL_1VWW_0701/8/68:90No text annotation
HL_1VWW_0721/8/121:129No text annotation
geometric
HL_4V88_194
NA

Problematic loops

#loop idProblemSequence
HL_1VWW_005No text annotation
HL_1VWW_024No text annotation
HL_1VWW_040No text annotation
HL_1VWW_055No text annotation
HL_1VWW_063No text annotation
HL_1VWW_071tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1VWW_0011/5/6:7,
1/8/149:151		Single bulged C
geometric
IL_6XKO_001
IL_61258.15
IL_1VWW_0031/5/26:29,
1/5/53:57		No text annotation
IL_1VWW_0041/5/81:88,
1/5/96:102		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_006
NA
IL_1VWW_0061/5/122:128,
1/5/140:147		No text annotation
IL_1VWW_0071/5/160:162,
1/5/273:276		No text annotation
geometric
IL_4V87_185
NA
IL_1VWW_0081/5/168:173,
1/5/263:267		No text annotation
IL_1VWW_0091/5/180:182,
1/5/255:256		Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_1VWW_0101/5/184:189,
1/5/252:253		Major groove intercalation
geometric
IL_1U9S_003
IL_82107.4
IL_1VWW_0111/5/199:201,
1/5/214:215		Single bulged U
geometric
IL_4V9F_029
IL_89505.4
IL_1VWW_0121/5/348:350,
1/8/25:26		Single bulged A
geometric
IL_5J7L_246
IL_31462.5
IL_1VWW_0131/5/387:390,
1/5/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_1VWW_0151/5/459:460,
1/5/695:697		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_1VWW_0161/5/462:474,
1/5/680:693		No text annotation
IL_1VWW_0171/5/482:497,
1/5/656:672		No text annotation
IL_1VWW_0181/5/497:499,
1/5/655:656		No text annotation
IL_1VWW_0191/5/500:505,
1/5/653:654		Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_1VWW_0201/5/508:510,
1/5/649:650		No text annotation
IL_1VWW_0211/5/512:515,
1/5/646:647		Multiple bulged bases
geometric
IL_3MXH_004
IL_82107.4
IL_1VWW_0221/5/722:724,
1/5/942:946		No text annotation
IL_1VWW_0231/5/726:731,
1/5/938:940		No text annotation
IL_1VWW_0241/5/731:735,
1/5/928:938		No text annotation
IL_1VWW_0251/5/735:737,
1/5/927:928		Single stack bend
geometric
IL_5TBW_070
NA
IL_1VWW_0261/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_8C3A_393
NA
IL_1VWW_0281/5/989:992,
1/5/1051:1064		No text annotation
IL_1VWW_0291/5/1081:1082,
1/5/1217:1219		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.4
IL_1VWW_0301/5/1082:1085,
1/5/1212:1217		No text annotation
IL_1VWW_0311/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_6XKO_001
IL_61258.15
IL_1VWW_0321/5/1094:1097,
1/5/1198:1202		No text annotation
geometric
IL_1HYS_004
IL_64231.5
IL_1VWW_0341/5/1425:1429,
1/5/1455:1460		No text annotation
IL_1VWW_0351/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_5J7L_333
IL_09705.15
IL_1VWW_0381/5/1550:1551,
1/5/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_00225.13
IL_1VWW_0401/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
geometric
IL_8C3A_034
NA
IL_1VWW_0421/5/1732:1737,
1/5/1792:1797		No text annotation
IL_1VWW_0431/5/1737:1745,
1/5/1785:1792		No text annotation
IL_1VWW_0441/5/1746:1759,
1/5/1773:1784		No text annotation
IL_1VWW_0461/5/1905:1909,
1/5/2067:2071		UAA/GAN
geometric
IL_8C3A_051
NA
IL_1VWW_0471/5/1910:1922,
1/5/2062:2066		No text annotation
IL_1VWW_0481/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_1VWW_0491/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_1VWW_0501/5/1945:1951,
1/5/2032:2037		No text annotation
IL_1VWW_0511/5/1957:1967,
1/5/2020:2026		No text annotation
IL_1VWW_0521/5/1969:2001,
1/5/2016:2018		No text annotation
IL_1VWW_0531/5/2001:2005,
1/5/2014:2016		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_51387.2
IL_1VWW_0551/5/2087:2128,
1/5/2246:2270		No text annotation
IL_1VWW_0571/5/2302:2310,
1/5/2328:2333		No text annotation
IL_1VWW_0581/5/2310:2315,
1/5/2324:2328		No text annotation
IL_1VWW_0591/5/2402:2405,
1/5/2785:2802		No text annotation
IL_1VWW_0601/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_1VWW_0611/5/2446:2450,
1/5/2509:2514		UAA/GAN
geometric
IL_8C3A_067
NA
IL_1VWW_0621/5/2477:2479,
1/5/2499:2500		Single stack bend
geometric
IL_7MLX_001
IL_90729.1
IL_1VWW_0631/5/2542:2547,
1/5/2772:2774		Decoding loop related
geometric
IL_5Z1I_002
NA
IL_1VWW_0641/5/2589:2596,
1/5/2749:2756		No text annotation
IL_1VWW_0661/5/2613:2615,
1/5/2722:2726		No text annotation
IL_1VWW_0671/5/2642:2648,
1/5/2685:2692		No text annotation
IL_1VWW_0681/5/2648:2664,
1/5/2670:2685		No text annotation
IL_1VWW_0691/5/2702:2705,
1/5/2710:2714		No text annotation
IL_1VWW_0711/5/2844:2846,
1/5/3842:3844		Isolated tWW turn
geometric
IL_7A0S_060
IL_67095.2
IL_1VWW_0721/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_1VWW_0731/5/2847:2855,
1/5/3837:3841		No text annotation
geometric
IL_4V9F_111
IL_22854.4
IL_1VWW_0741/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_4V9F_062
IL_76758.2
IL_1VWW_0751/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_1VWW_0771/5/2901:2905,
1/5/3589:3598		No text annotation
IL_1VWW_0791/5/3660:3665,
1/5/3677:3684		Kink-turn related
geometric
IL_5TBW_083
NA
IL_1VWW_0821/5/3895:3902,
1/5/4558:4565		No text annotation
IL_1VWW_0831/5/3912:3915,
1/5/4388:4390		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_87907.2
IL_1VWW_0861/5/4095:4099,
1/5/4110:4113		No text annotation
IL_1VWW_0871/5/4238:4245,
1/5/4263:4286		No text annotation
IL_1VWW_0881/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_1VWW_0891/5/4294:4299,
1/5/4311:4316		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_1VWW_0901/5/4453:4459,
1/5/4517:4528		No text annotation
IL_1VWW_0911/5/4536:4540,
1/5/4545:4550		Triple non-canonical cWW pairs
geometric
IL_8DP3_002
IL_49751.4
IL_1VWW_0921/5/4577:4582,
1/5/4721:4726		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_1VWW_0931/5/4582:4585,
1/5/4717:4721		Double sheared
geometric
IL_5TBW_114
NA
IL_1VWW_0941/5/4590:4594,
1/5/4616:4620		Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_1VWW_0951/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_1VWW_0961/5/4624:4629,
1/5/4669:4673		No text annotation
IL_1VWW_0971/5/4632:4637,
1/5/4662:4666		No text annotation
geometric
IL_4WF9_102
IL_23774.1
IL_1VWW_0981/5/4637:4642,
1/5/4655:4662		No text annotation
IL_1VWW_0991/5/4681:4685,
1/5/4705:4709		UAA/GAN
geometric
IL_8VTW_054
NA
IL_1VWW_1011/5/4755:4765,
1/5/4869:4878		No text annotation
IL_1VWW_1021/5/4768:4772,
1/5/4863:4866		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_1VWW_1031/5/4891:4896,
1/5/4924:4928		No text annotation
IL_1VWW_1041/5/4899:4901,
1/5/4920:4921		No text annotation
IL_1VWW_1051/5/4996:5017,
1/5/5032:5055		No text annotation
IL_1VWW_1061/7/15:19,
1/7/59:64		Triple non-canonical cWW pairs
geometric
IL_8VMB_003
IL_49751.4
IL_1VWW_1081/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
IL_68140.4
IL_1VWW_1091/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_1MJI_004
IL_58103.11
IL_1VWW_1101/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_1VWW_1111/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_87907.2
IL_1VWW_1121/7/82:86,
1/7/91:94		Tandem non-canonical cWW pairs
geometric
IL_8C3A_438
NA

Problematic loops

#loop idProblemSequence
IL_1VWW_002No text annotation
IL_1VWW_005No text annotation
IL_1VWW_014No text annotation
IL_1VWW_027No text annotation
IL_1VWW_033No text annotation
IL_1VWW_036No text annotation
IL_1VWW_037No text annotation
IL_1VWW_039Triple sheared with non-canonical cWW
IL_1VWW_041Isolated non-canonical cWW pair
IL_1VWW_045Tandem non-canonical cWW pairs
IL_1VWW_054Partly complementary
IL_1VWW_056Tandem non-canonical cWW pairs
IL_1VWW_065No text annotation
IL_1VWW_070No text annotation
IL_1VWW_076No text annotation
IL_1VWW_078Isolated non-canonical cWW pair
IL_1VWW_080No text annotation
IL_1VWW_081Isolated non-canonical cWW pair
IL_1VWW_084No text annotation
IL_1VWW_085Triple sheared
IL_1VWW_100No text annotation
IL_1VWW_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1VWW_0031/5/380:387,
1/5/414:421,
1/8/13:20		No text annotation
J3_1VWW_0041/5/447:459,
1/5/697:704,
1/5/1293:1299		No text annotation
J3_1VWW_0051/5/706:713,
1/5/955:978,
1/5/1276:1291		No text annotation
J3_1VWW_0111/5/2575:2578,
1/5/2583:2589,
1/5/2756:2757		No text annotation
J3_1VWW_0131/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
geometric
J3_8C3A_009
NA
J3_1VWW_0141/5/4463:4470,
1/5/4485:4493,
1/5/4507:4513		No text annotation
J3_1VWW_0151/5/4748:4754,
1/5/4879:4888,
1/5/4931:4952		No text annotation
J5_1VWW_0011/5/111:116,
1/5/155:160,
1/5/276:283,
1/5/304:310,
1/5/327:330		No text annotation
J5_1VWW_0021/5/1333:1340,
1/5/1516:1519,
1/5/1658:1662,
1/5/2287:2295,
1/5/2339:2353		No text annotation
J5_1VWW_0031/5/1352:1355,
1/5/1384:1399,
1/5/1418:1421,
1/5/1464:1468,
1/5/1496:1504		No text annotation
J5_1VWW_0041/5/2855:2863,
1/5/2887:2891,
1/5/3610:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
J8_1VWW_0011/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4238,
1/5/4286:4291,
1/5/4318:4319,
1/5/4328:4346,
1/5/4366:4381		No text annotation
J8_1VWW_0021/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4245,
1/5/4263:4291,
1/5/4318:4319,
1/5/4328:4346,
1/5/4366:4381		No text annotation

Problematic loops

#loop idProblemSequence
J3_1VWW_001No text annotation
J3_1VWW_002No text annotation
J3_1VWW_006No text annotation
J3_1VWW_007No text annotation
J3_1VWW_008No text annotation
J3_1VWW_009No text annotation
J3_1VWW_010No text annotation
J3_1VWW_012No text annotation
J3_1VWW_016No text annotation
J3_1VWW_017No text annotation
J4_1VWW_001No text annotation
J4_1VWW_002No text annotation
J4_1VWW_003No text annotation
J4_1VWW_004No text annotation
J5_1VWW_005No text annotation
J6_1VWW_001No text annotation
J7_1VWW_001No text annotation
J10_1VWW_001No text annotation

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