HL_1VWW_012

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67042.16

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

321

Unit IDs

1VWW|1|5|G|1171
1VWW|1|5|C|1172
1VWW|1|5|G|1173
1VWW|1|5|G|1174
1VWW|1|5|A|1175
1VWW|1|5|C|1176
1VWW|1|5|U|1177
1VWW|1|5|G|1178
1VWW|1|5|U|1179
1VWW|1|5|C|1180
1VWW|1|5|C|1181
1VWW|1|5|C|1182
1VWW|1|5|C|1183
1VWW|1|5|A|1184
1VWW|1|5|G|1185
1VWW|1|5|U|1186
1VWW|1|5|G|1187
1VWW|1|5|C|1188
1VWW|1|5|G|1189
1VWW|1|5|C|1190

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA