HL_1VWW_019

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACGUGCAAAUC

Length

12 nucleotides

Bulged bases

1VWW|1|5|U|1596, 1VWW|1|5|C|1598, 1VWW|1|5|A|1600, 1VWW|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67042.16

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

321

Unit IDs

1VWW|1|5|G|1592
1VWW|1|5|A|1593
1VWW|1|5|C|1594
1VWW|1|5|G|1595
1VWW|1|5|U|1596
1VWW|1|5|G|1597
1VWW|1|5|C|1598
1VWW|1|5|A|1599
1VWW|1|5|A|1600
1VWW|1|5|A|1601
1VWW|1|5|U|1602
1VWW|1|5|C|1603

Current chains

Chain 5

28S ribosomal RNA

Nearby chains