HL_1VWW_035

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUUCUCUUUUC

Length

13 nucleotides

Bulged bases

1VWW|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76004.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

1VWW|1|5|G|2622
1VWW|1|5|A|2623
1VWW|1|5|G|2624
1VWW|1|5|U|2625
1VWW|1|5|U|2626
1VWW|1|5|C|2627
1VWW|1|5|U|2628
1VWW|1|5|C|2629
1VWW|1|5|U|2630
1VWW|1|5|U|2631
1VWW|1|5|U|2632
1VWW|1|5|U|2633
1VWW|1|5|C|2634

Current chains

Chain 5

28S ribosomal RNA

Nearby chains