HL_1VWW_043

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCGCGGCGGG

Length

11 nucleotides

Bulged bases

1VWW|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74411.2

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

18

Unit IDs

1VWW|1|5|C|3666
1VWW|1|5|C|3667
1VWW|1|5|C|3668
1VWW|1|5|G|3669
1VWW|1|5|C|3670
1VWW|1|5|G|3671
1VWW|1|5|G|3672
1VWW|1|5|C|3673
1VWW|1|5|G|3674
1VWW|1|5|G|3675
1VWW|1|5|G|3676

Current chains

Chain 5

28S ribosomal RNA

Nearby chains