HL_1VWW_044

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCG

Length

35 nucleotides

Bulged bases

1VWW|1|5|U|3709, 1VWW|1|5|A|3712, 1VWW|1|5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39895.10

Basepair signature

cWW-tSW-R

Number of instances in this motif group

45

Unit IDs

1VWW|1|5|C|3708
1VWW|1|5|U|3709
1VWW|1|5|G|3710
1VWW|1|5|A|3711
1VWW|1|5|A|3712
1VWW|1|5|U|3713
1VWW|1|5|G|3714
1VWW|1|5|U|3715
1VWW|1|5|C|3716
1VWW|1|5|A|3717
1VWW|1|5|A|3718
1VWW|1|5|A|3719
1VWW|1|5|G|3720
1VWW|1|5|U|3721
1VWW|1|5|G|3722
1VWW|1|5|A|3723
1VWW|1|5|A|3724
1VWW|1|5|G|3725
1VWW|1|5|A|3726
1VWW|1|5|A|3727
1VWW|1|5|A|3728
1VWW|1|5|U|3729
1VWW|1|5|U|3730
1VWW|1|5|C|3731
1VWW|1|5|A|3732
1VWW|1|5|A|3733
1VWW|1|5|U|3734
1VWW|1|5|G|3735
1VWW|1|5|A|3736
1VWW|1|5|A|3737
1VWW|1|5|G|3738
1VWW|1|5|C|3739
1VWW|1|5|G|3740
1VWW|1|5|C|3741
1VWW|1|5|G|3742

Current chains

Chain 5

28S ribosomal RNA

Nearby chains