HL_1VWW_046

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCGUCAUCUAAUUAGUGACGCG

Length

31 nucleotides

Bulged bases

1VWW|1|5|A|3785, 1VWW|1|5|C|3794, 1VWW|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85534.5

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

9

Unit IDs

1VWW|1|5|C|3781
1VWW|1|5|C|3782
1VWW|1|5|A|3783
1VWW|1|5|A|3784
1VWW|1|5|A|3785
1VWW|1|5|U|3786
1VWW|1|5|G|3787
1VWW|1|5|C|3788
1VWW|1|5|C|3789
1VWW|1|5|U|3790
1VWW|1|5|C|3791
1VWW|1|5|G|3792
1VWW|1|5|U|3793
1VWW|1|5|C|3794
1VWW|1|5|A|3795
1VWW|1|5|U|3796
1VWW|1|5|C|3797
1VWW|1|5|U|3798
1VWW|1|5|A|3799
1VWW|1|5|A|3800
1VWW|1|5|U|3801
1VWW|1|5|U|3802
1VWW|1|5|A|3803
1VWW|1|5|G|3804
1VWW|1|5|U|3805
1VWW|1|5|G|3806
1VWW|1|5|A|3807
1VWW|1|5|C|3808
1VWW|1|5|G|3809
1VWW|1|5|C|3810
1VWW|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains