HL_1VWW_056

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACCUUUUGGGUUUUAAGC

Length

19 nucleotides

Bulged bases

1VWW|1|5|C|4349, 1VWW|1|5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.6

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

10

Unit IDs

1VWW|1|5|G|4347
1VWW|1|5|A|4348
1VWW|1|5|C|4349
1VWW|1|5|C|4350
1VWW|1|5|U|4351
1VWW|1|5|U|4352
1VWW|1|5|U|4353
1VWW|1|5|U|4354
1VWW|1|5|G|4355
1VWW|1|5|G|4356
1VWW|1|5|G|4357
1VWW|1|5|U|4358
1VWW|1|5|U|4359
1VWW|1|5|U|4360
1VWW|1|5|U|4361
1VWW|1|5|A|4362
1VWW|1|5|A|4363
1VWW|1|5|G|4364
1VWW|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains